Closed shaman-narayanasamy closed 3 weeks ago
I believe the problem is missing libraries on your machine. Which OS are you using? If you have apt-get you can do:
sudo apt-get install libopenmpi-dev
Note that since Nonpareil v3.0 there is a new kmer-based kernel available (-T kmer
) that makes computations much faster, but does not support MPI. MPI can only be used with the traditional alignment kernel (-T alignment
).
I have now switched out of deprecated MPI C++ bindings to the stable C bindings since v3.5, and this should be fully solved now. Please feel free to reopen if you continue to experience any issues.
Dear authors,
It is me again :)
The install for the regular version of
nonpareil
. I am now attempting the install ofnonpareil-mpi
. However, below is the error that I receive:Below is the MPI version available on my cluster.
Let me know if you need more information. It would be nice to implement the mpi version of the tool.
Best regards, Shaman