I see some strange behavior, where the some of the output files don't have the prefix assigned via -b:
$ ls
C1825_AAGACGA_L006.nobg.fastq
$ nonpareil -s C1825_AAGACGCA_L006.nobg.fastq -f fastq -T kmer -o C1825
Nonpareil v3.2
[ 0.0] reading C1825_AAGACGCA_L006.nobg.fastq
[ 0.0] Picking 10000 random sequences
[ 0.0] Started counting
[ 6.5] Read file with 18544670 sequences
[ 6.5] Average read length is 103.408643bp
[ 6.5] Sub-sampling library
[ 6.7] Evaluating consistency
[ 6.7] Everything seems correct
$ ls
C1825 C1825_AAGACGCA_L006.nobg.fastq ??UH?????.npa ??UH?????.npc ??UH?????.npl
The files named ??UH????? are a bit annoying to work with on the terminal, and running nonpareil twice in the same dir overwrites these files, which is also a bit annoying.
My system is Linux:
$ uname -srvmpio
Linux 2.6.32-696.13.2.el6.x86_64 #1 SMP Thu Oct 5 17:13:40 CDT 2017 x86_64 x86_64 x86_64 GNU/Linux
Hi,
I see some strange behavior, where the some of the output files don't have the prefix assigned via
-b:The files named
??UH?????are a bit annoying to work with on the terminal, and running nonpareil twice in the same dir overwrites these files, which is also a bit annoying.My system is Linux:
Is this the intended behavior?