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lmrodriguezr / nonpareil

Estimate metagenomic coverage and sequence diversity
http://enve-omics.ce.gatech.edu/nonpareil/
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Nonpareil curve output file #34

Closed abenaa07 closed 4 years ago

abenaa07 commented 6 years ago

It looks like the nonpareil output file has on the x axis sequencing effort (bp) and that number is not accurate. The x axis should be sequencing effort (number of reads) that number should then be multiplied by the average read length to figure out sequencing effort in number of bps.

lmrodriguezr commented 6 years ago

Hello @abenaa07 Do you have an example with the sequencing effort is being reported in reads instead of bp? I'm checking at the example in the website (http://enve-omics.ce.gatech.edu/nonpareil/results?jid=example1) and it looks like it's correctly rendered in bp.

Thanks! Miguel.

lmrodriguezr commented 4 years ago

I'm closing this issue for lack of response, but please feel free to reopen if the problem persists.