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lmrodriguezr / nonpareil

Estimate metagenomic coverage and sequence diversity
http://enve-omics.ce.gatech.edu/nonpareil/
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Fatal error: Reduce the number of query reads (-X) #53

Closed dtsementzi3 closed 2 years ago

dtsementzi3 commented 2 years ago

I had the following fatal error while running nonpareil Nonpareil v3.4 as follows:

nonpareil -T kmer -s ../xx.human/$DS.NonHuman.1.fa -b np$DS -t 16 -f fasta -X 100

Fatal error: Reduce the number of query reads (-X) to 10%% of total reads [ 0.0] Fatal error: Reduce the number of query reads (-X) to 10%% of total reads

It turns out I had an error in the path (my files names are .fasta and not .fa), so when that was fixed it runs fine. But the error message is misleading

Thank you!

lmrodriguezr commented 2 years ago

Thanks! misleading indeed. I'm fixing this soon