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lmrodriguezr / nonpareil

Estimate metagenomic coverage and sequence diversity
http://enve-omics.ce.gatech.edu/nonpareil/
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Missing similarity (-S) option in usage output #61

Open danpal96 opened 1 year ago

danpal96 commented 1 year ago

Nonpareil v3.4.1

The -L option in the usage output talks about a similarity option (-S) but it is not described in the usage output.

 -L <num> : Minimum overlapping percentage of the aligned region
             on the largest sequence. The similarity (see -S) is 
             evaluated for the aligned region only.
             By default: 50