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loculus-project / loculus

An open-source software package to power microbial genomic databases
https://loculus.org
GNU Affero General Public License v3.0
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Add an exploratory E2E test that produces a tree for visual inspection #2717

Open corneliusroemer opened 2 months ago

corneliusroemer commented 2 months ago

It's hard to check a FASTA file for anomalies, as it's just ACGT etc.

It's much easier to check for anomalies in an analysis that uses a FASTA file.

Hence, we should turn loculus data into an analysis that can be more readily explored for anomalies, e.g. make an auspice.json based off loculus data.

chaoran-chen commented 2 months ago

Sounds useful! But I don't understand yet what you have in mind: could you please describe a bit more about what you are envisioning?