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loculus-project / loculus

An open-source software package to power microbial genomic databases
https://loculus.org
GNU Affero General Public License v3.0
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feat(ingest): Update datasets package in ingest #2829

Closed anna-parker closed 1 day ago

anna-parker commented 1 day ago

resolves https://github.com/loculus-project/loculus/issues/2828

preview URL: https://fix-nci-datasets.loculus.org/

Summary

Apply error log suggestions (see below) and update the datasets package.

For best results
1. Make sure to use --as-json-lines with the datasets command
2. Make sure that you're using the latest version of the datasets command line tool

Screenshot

Sequences are showing up again for cchf and west nile:

image