Low threshold length for `calculate_HOR_lengths.py`

logsdon-lab / CenMAP

Centromere mapping and annotation pipeline

MIT License

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Closed koisland closed 5 months ago

koisland commented 6 months ago

The threshold HOR length of calculate_HOR_length.py is too low and picks up small repeats that are not part of main HOR array.

NA19239_chr5_haplotype1-0000022:45670770-52937918   1147947         1159317         11370

ch5_hor_stv