Closed koisland closed 5 months ago
https://github.com/logsdon-lab/hgsvc3/blob/76836113b10c0a507fce52fe00955712229e6b50/workflow/rules/repeatmasker.smk#L55-L84
The count_complete_cens rule runs before RepeatMasker and the partial check so its counts are inflated. I was able to manually correct for this count but it needs to be done automatically.
count_complete_cens
RepeatMasker
https://github.com/logsdon-lab/hgsvc3/blob/76836113b10c0a507fce52fe00955712229e6b50/workflow/rules/repeatmasker.smk#L55-L84
The
count_complete_censrule runs beforeRepeatMaskerand the partial check so its counts are inflated. I was able to manually correct for this count but it needs to be done automatically.