logsdon-lab / CenMAP

Centromere mapping and annotation pipeline
MIT License
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Trimming doesn't remove scaffolds at edges #79

Open koisland opened 1 month ago

koisland commented 1 month ago

K1463_2189_chr21_pat-0000786_894403-3537119

Without a het within the main HOR array, this contig would have been incorrectly called as misassembled.

koisland commented 1 month ago

This command with seqkit may work to trim terminal N's before being QC'ed (untested).