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logsdon-lab
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CenStats
Centromere statistics toolkit
MIT License
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feat: Fixing edge cases and rename project
#12
Closed
koisland
closed
4 months ago
koisland
commented
4 months ago
Rename to
CenStats
from
cen-stats
Added
--restrict_13_21
and
--restrict_14_22
to
status
command.
Added MIT license.
Added test visualization script and plots.
Refactored main script to use subcommands for future commands.
Changed edit distance calculation to account for length in acrocentric chromosome q-arms.
Fixed left edge for partial check.
Fixed ref name included entire contig name preventing subsetting repeats to q-arm.
Removed flatten repeats function as removed too much repeat information resulting in mismappings.
CenStats
fromcen-stats
--restrict_13_21
and--restrict_14_22
tostatus
command.