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loic-yengo / Code_for_Genomic_Partitioning_of_Inbreeding_Depression

Code_for_Genomic_Partitioning_of_Inbreeding_Depression
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running the GWAS #1

Open malawsky opened 3 years ago

malawsky commented 3 years ago

How do you recommend running the additive-dominance GWAS? Are there any scripts you can provide? Thanks!

loic-yengo commented 3 years ago

Hey Malawsky. You use PLINK for that: plink --bfile myGeno --pheno myPhenotype.txt --linear 'genotypic' --out myResult

Check PLINK doc here: https://www.cog-genomics.org/plink/1.9/assoc

Cheers,

Loic