Open rotheconrad opened 6 years ago
I am using this command: idba_ud -r ${infile} --mink 55 --maxk 124 --min_contig 500 --num_threads 10 -o ${oufile} or this: idba_ud -r ${infile} --mink 55 --min_contig 500 --num_threads 10 -o ${oufile} idba_ud -r ${infile} --mink 83 --min_contig 500 --num_threads 10 -o ${oufile} idba_ud -r ${infile} --mink 101 --min_contig 500 --num_threads 10 -o ${oufile}
which creates an unspecified directory for the assembly called 895319?
I don't know where this number comes from. It is not what I tell it.
If I use this command: idba_ud -r ${infile} -o ${outfile} --min_contig 500 --num_threads 10
I get the actual output directory I specify.
Any thoughts? Thank you.
I am using this command: idba_ud -r ${infile} --mink 55 --maxk 124 --min_contig 500 --num_threads 10 -o ${oufile} or this: idba_ud -r ${infile} --mink 55 --min_contig 500 --num_threads 10 -o ${oufile} idba_ud -r ${infile} --mink 83 --min_contig 500 --num_threads 10 -o ${oufile} idba_ud -r ${infile} --mink 101 --min_contig 500 --num_threads 10 -o ${oufile}
which creates an unspecified directory for the assembly called 895319?
I don't know where this number comes from. It is not what I tell it.
If I use this command: idba_ud -r ${infile} -o ${outfile} --min_contig 500 --num_threads 10
I get the actual output directory I specify.
Any thoughts? Thank you.