I was wondering if there is a way to output the assembly graph generated by IDBA-UD into a format that can be visualized with a tool like Bandage? I am specifically interested in inspecting the edges connecting my contigs. Currently fastg, LastGraph, Trinity.fasta, ASQG, and GFA formats are supported by Bandage.
I was wondering if there is a way to output the assembly graph generated by IDBA-UD into a format that can be visualized with a tool like Bandage? I am specifically interested in inspecting the edges connecting my contigs. Currently fastg, LastGraph, Trinity.fasta, ASQG, and GFA formats are supported by Bandage.
Thanks!