Open sudeshna-ghosh opened 4 years ago
I ran IDBA-UD recently. My output looks like this
scaffold_0 length_285165 read_count_39166 CGGGCCCTACCGTAGCAGCCGCTACGGTAGGGCCCGTGTCCAGT...... scaffold_1 length_297291 read_count_43258 GAGAGCGTCATCGATCATCGCGACGCAGGTTAACAGCGATTGCCGATGTTTACAACC........
I am wondering if read_count now refers to reads that aligned to a scaffold. I have seen previous discussion that 'read_count' refers to the k-mer count https://groups.google.com/forum/#!topic/hku-idba/5z696QgAooM Thanks,
I ran IDBA-UD recently. My output looks like this
I am wondering if read_count now refers to reads that aligned to a scaffold. I have seen previous discussion that 'read_count' refers to the k-mer count https://groups.google.com/forum/#!topic/hku-idba/5z696QgAooM Thanks,