I am concerned that my IDBA-UD run had problems. Although the output contained a contigs.fa file, there was no scaffold.fa file generated. I changed the constant kMaxShortSequence in src/sequence/short_sequence.h to support my longer read length. Any suggestions would be appreciated, thanks.
I am concerned that my IDBA-UD run had problems. Although the output contained a contigs.fa file, there was no scaffold.fa file generated. I changed the constant kMaxShortSequence in src/sequence/short_sequence.h to support my longer read length. Any suggestions would be appreciated, thanks.