I recently ran on SLURM a script containing the following command:
idba_ud -r M002_interleaved.fasta -o idba_assembly_M002 --num_threads 16
And got the following error: _/var/spool/slurmd/job67881681/slurm_script: line 16: 3644 Segmentation fault idba_ud -r M002_interleaved.fasta -o idba_assembly_M002 --numthreads 16
I have tried to decrease the thread number to ten and it didn't solve. I have also tried to rerun fq2fa and run the command again, but nothing has changed. I saw the .fasta file and it seems OK.
May someone please help me?
@lguy @gerddie @loneknightpy @voutcn @martinbaste
Hello!
I recently ran on SLURM a script containing the following command:
idba_ud -r M002_interleaved.fasta -o idba_assembly_M002 --num_threads 16And got the following error: _/var/spool/slurmd/job67881681/slurm_script: line 16: 3644 Segmentation fault idba_ud -r M002_interleaved.fasta -o idba_assembly_M002 --numthreads 16
I have tried to decrease the thread number to ten and it didn't solve. I have also tried to rerun fq2fa and run the command again, but nothing has changed. I saw the .fasta file and it seems OK.
May someone please help me? @lguy @gerddie @loneknightpy @voutcn @martinbaste
Thank you in advance.