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lonelyjoeparker / befi-bats-gui

Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
http://science.lonelyjoeparker.com
GNU General Public License v3.0
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tree states has "rate" in it #18

Open Jigyasa3 opened 5 years ago

Jigyasa3 commented 5 years ago

I am running the software on a tree file generated from BEAST2 software. I have made all the other changes suggested in Read me file. But how do I change the following to "correct" format. Its the output tree file from BEAST2 run.

incorrect format in my tree-

_tree STATE_2501000 = ((((((((((((((((((((1[&rate=2.8755151906732075]:0.8624480263035175,((487[&rate=0.31471708510328367 tree STATE_2502000 = ((((((((((((((((((((1[&rate=2.8728837711341693]:0.855875795101136,((487[&rate=0.30825580260007357] tree STATE_2503000 = ((((((((((((((((((((1[&rate=2.8728837711341693]:0.8578542352160485,((487[&rate=0.30825580260007357 tree STATE2504000 = ((((((((((((((((((((1[&rate=2.8743205802353304]:0.857062907137151,((487[&rate=0.3116125366430413]:

correct format in example.trees file-

_tree STATE_1011000 = [&R] ((((((36:0.001896127291127944,29:0.001896127291127944):0.002800803434474394,((39:0.003245683365344$ tree STATE_1022000 = [&R] (((((32:0.009253570264584903,((14:0.0056626055174459075,((((7:3.459687568196239E-4,53:3.4596875681$ tree STATE1033000 = [&R] (((((41:0.011685441434542346,4:0.011685441434542346):0.025360360099212727,(((((((22:0.003236010026$