search

lonelyjoeparker / qmul-genome-convergence-pipeline

API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
4 stars 2 forks source link

detection of locus identity in serialised results files (uk.ac.qmul.sbcs.evolution.convergence.util.SitewiseSpecificLikelihoodSupportAaml) #16

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Current parsing of serialized 
uk.ac.qmul.sbcs.evolution.convergence.util.SitewiseSpecificLikelihoodSupportAaml
 objects for local examination of HTC results depends on specific order of data 
in filename (e.g., Ensembl codes / ENSG signifier present in 6th token 
(index==5) of 
uk.ac.qmul.sbcs.evolution.convergence.util.SitewiseSpecificLikelihoodSupportAaml
.someRun.getInputFile().getPath().split("_")

TODO: scan inputFile split tokens for grep matches to ENSG

Original issue reported on code.google.com by joeparke...@gmail.com on 29 Jul 2013 at 4:27

GoogleCodeExporter commented 9 years ago 
Addressed by revision #r186

Original comment by joeparke...@gmail.com on 29 Jul 2013 at 4:48