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lonelyjoeparker / qmul-genome-convergence-pipeline

API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
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GeneralCongruenceRunnerXML (r212) :80 - models hardcoded #31

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
GeneralCongruenceRunnerXML:80 r212

AA substitution models list is hardcoded:
<pre>String[] modelsList = {  "wag", "jones" };<pre>

Feature request: amend to user-specified models with default value of 'wag'.
Possibly via config.txt parsing (currently config.txt only specifies taxon 
list).

Original issue reported on code.google.com by joeparke...@gmail.com on 4 Aug 2014 at 1:10