Feature list / tweaking bugs for phylogenomic dataset browser 0.9 release

[lonelyjoeparker]

Features needed:

• [x] #46 Phylogeny stats
  • [x] #59 PARSE NEXUS TREEFILES
  • [x] #57 remaining tree stats if time
  • [x] #58 phylogeny view stats scrollpane, text export
• [x] About and version string
• [x] Name to Context
• [x] Update github help.md
• [x] Tooltip help string? Push back to 0.9.1+
• [x] additional features:
  • [x] font size? Push back to 0.9.1+
  • [x] colouring? Push back to 0.9.1+
  • [x] #42 translation behaviour?
• [x] Add charting behaviour #52
  • [x] For alignments
  • [x] For phylogenies Push back to 0.9.1+
  • [x] #39 Scrolling phylogeny
  • [X] #36 Correct table header widths
  • [x] #53 Use system hotkeys
  • [x] #54 Track alignment pane position between AA and NT windows.

Bugs to fix:

• [x] Translate() method using expanded hash
• [x] 'phylogeny display here' label in phylogeny tab
• [x] text export in menu

[lonelyjoeparker]

Addressed in v0.8 prerelease (up to and including https://github.com/lonelyjoeparker/qmul-genome-convergence-pipeline/commit/ab766d123c623f770b81f09d2c067b9752bfcdbd today):

• About and version string
• Name to Context
• Update github help.md
• Tooltip help string?

[lonelyjoeparker]

Outstanding issues (from above):

• Colouring
• Tooltip / buttons for phylogeny tab
• translation full hash options (see also https://github.com/lonelyjoeparker/qmul-genome-convergence-pipeline/issues/42; implemented partially by updated translation hash init in https://github.com/lonelyjoeparker/qmul-genome-convergence-pipeline/commit/2d7e92f06dde4426a55748a58da1b07e592deecc but not yet accessed by CONTEXT or GCP)
• clean up phylogeny tab

Other outstanding issues:

• https://github.com/lonelyjoeparker/qmul-genome-convergence-pipeline/issues/39 : Phylogeny scrollpane
• https://github.com/lonelyjoeparker/qmul-genome-convergence-pipeline/issues/36 : Phylogeny table widths

[lonelyjoeparker]

Also issue #46 phylogeny statistics