Interface definition: WP6<-WP3

[oKoch]

Interface definition between WP6 and WP3:

Requirements of WP6 for WP3

1. A path to the BINDDetect output folders of TOBIAS (First possibility for the TFBS)
2. Naming for the different cell clusters
3. A path to .bed File of TFBS (Second possibility for the TFBS)
   • Please name the file with the selected celltype or cell cluster: e.g. .bed file structure: chromosome ; open-chromatin-region (100503870 - 100506200) ; Annotation/tag .bed:

     
     chr1    100503870   100506200   RP4-2
     chr1    100713300   100715320   HIAT1
     chr1    100818560   100819310   BRI3P1

[oKoch]

Protocol 08.01.2021 : WP3 gives WP6 the path to the different cluster and the bindetect folder. (cluster=celltype)

• example bindetect: /mnt/workspace_stud/stud8/testordner/cluster10/BINDetect BINDetetectoutput für ein Cluster: /mnt/workspace_stud/stud8/testordner/cluster10/BINDetect

modifiziertes Peakcalling file:

• /mnt/workspace_stud/stud8/testordner/filteredNP.bed

Next step:

• WP6 tests if tf_comb works with the bindetect folder.
• WP3 let wp6 know, when first real data is available

[oKoch]

What is the condition of Tobias´s bindetect that you are using @WP3