loosolab TF-COMB issues

loosolab / TF-COMB

Transcription Factor Co-Occurrence using Market Basket analysis

https://tf-comb.readthedocs.io

MIT License

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issues

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Subselection with a TF that does not exist returns no Message/Error

#33 oKoch closed 2 years ago
1
add possibility to trigger analyze distances() from within DiffComb

#32 vheger opened 2 years ago
0
not possible to change distribution threshold in DiffCombObj.select_rules()

#31 vheger closed 2 years ago
1
feature/28 split dependencies for tf comb and documentation

#30 oKoch closed 2 years ago
1
Split of dependencies for TF-COMB and documentation

#28 msbentsen closed 2 years ago
2
Revert "Add tf_comb utils documentation to html + Add missing dependency pandoc"

#27 msbentsen closed 2 years ago
2
Add tf_comb utils documentation to html + Add missing dependency pandoc

#26 oKoch closed 2 years ago
0
Some documentation markup is messed up (only distObj)

#25 vheger closed 2 years ago
0
Update Documentation for function in tfcomb/utils.py get_pair_locations()

#24 oKoch closed 2 years ago
6
Floating point error by differential analyses of sub-selection

#23 oKoch closed 2 years ago
4
rank score implementation according to #20 + code in blockquotes removal

#22 vheger closed 2 years ago
0
linear regression is slow for big datasets

#21 vheger closed 2 years ago
0
implement rank score

#20 vheger closed 2 years ago
0
resolve_overlapping in .TFBS_from_motifs() is super slow

#19 msbentsen closed 2 years ago
1
Function needed: integrate_external_data()

#18 msbentsen closed 3 years ago
1
add raw count column

#17 vheger closed 3 years ago
0
plot negative column correct

#16 vheger closed 2 years ago
1
Shift signal is too slow

#15 vheger closed 3 years ago
1
example notebook for distance analysis

#14 vheger closed 3 years ago
0
Smaller fixes to distance related functions

#13 msbentsen closed 3 years ago
0
implement overlapping handling count_distances

#12 vheger closed 3 years ago
0
plot_linres as own function

#11 vheger closed 3 years ago
0
print of empty self.TFBS raises error

#10 msbentsen closed 3 years ago
0
Inconsistent style/spacing in distances.py

#9 msbentsen closed 3 years ago
2
anchor_mode in count_within -> count_co_occurrence

#8 msbentsen closed 3 years ago
0
Error in plot_heatmap when TF1/TF2 only contains one TF

#7 msbentsen closed 3 years ago
0
implement parameters for analyze_distances() in objects.py

#6 vheger closed 3 years ago
1
remove parameter smooth from .analyze_signal_all()

#5 vheger closed 3 years ago
0
spam print output with .count_within()

#4 vheger closed 3 years ago
2
Hotfixes for Objects.py

#3 vheger closed 3 years ago
0
Problem with to_pickle() / from_pickle()

#2 vheger closed 3 years ago
2
added missing depencies and removed nxviz import

#1 vheger closed 3 years ago
0