search

loosolab / TOBIAS_snakemake

Snakemake pipeline for running TOBIAS analysis
MIT License
5 stars 2 forks source link

HOCOMOCO V12 pfm format #19

Open JustBioinfo opened 1 week ago

JustBioinfo commented 1 week ago

Hi, I'm trying your pipeline with mouse ATAseq data and the TFs database HOCOMOCO V12 ( non-redundant motif subset ).

Following a BINdetect error, I realized that in the motifs/all_motifs.txt file output by the pipeline, there's an unnamed 524th TF (a single > character as a name) at the beginning, whereas there are 523 at the input. If I delete the lines of this “phantom TF”, it unblocks the pipeline.

This is the first time I've used your tool, can you confirm that there's no problem solving the problem this way.

Thank you in advance for your help. Justine

jan1034 commented 1 day ago

Hi Justine, sorry for the late reply. Your fix will not cause any problems. But could you please provide the config of your pipeline run? I would like to reproduce the error and was yet not able to do that.

Bests, Jan