Closed pdimitron closed 5 years ago
apologies for all the edits, I was trying to figure out how to format the code.
Hi pdimitron,
Looks like your input files are fine. I looked at the error and found a bug in uropa occuring when subsetting .gtf's with comment lines - sorry about that.
I have released uropa 3.3.1 to resolve this issue. It is not available in bioconda yet, but you can use pip to install: pip install uropa
and add --upgrade
if you already installed using pip.
Calling uropa --version
should then read uropa 3.3.1
.
Hope this fixes the error!
Hi,
Thank you, yes that solved the problem.Thank you for your help.
Best
I'm fairly new to coding and I'm running into an error using your peak annotation package. No one in my lab is familiar with using it and I was hoping to get some help troubleshooting. I am running MacOSX El Capitan. Here is my code up until the error:
I have tried re-downloading miniconda3 and UROPA as well as using multiple .gtf files. I also checked my .json code with JSONLint. Any help would be appreciated.
Best