Making CSI the default indexing of GTF file

loosolab / UROPA

Universal RObust Peak Annotator

https://uropa-manual.readthedocs.io/

MIT License

15 stars 6 forks source link

Making CSI the default indexing of GTF file #25

Closed samuelruizperez closed 1 year ago

samuelruizperez commented 1 year ago

This PR:

Adds csi=True as the default to GTF indexing (attempting to solve #24.) I am not sure if a new try block would be better or if CSI indexing as the default is fine.

msbentsen commented 1 year ago

See https://github.com/loosolab/UROPA/issues/24#issuecomment-1774107130