Making CSI the default indexing of GTF file

loosolab / UROPA

Universal RObust Peak Annotator

https://uropa-manual.readthedocs.io/

MIT License

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Making CSI the default indexing of GTF file #25

Closed samuelruizperez closed 10 months ago

samuelruizperez commented 10 months ago

This PR:

Adds csi=True as the default to GTF indexing (attempting to solve #24.) I am not sure if a new try block would be better or if CSI indexing as the default is fine.

msbentsen commented 10 months ago

See https://github.com/loosolab/UROPA/issues/24#issuecomment-1774107130