lorentzben / visualize-ampliseq

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Efficacy of FIGARO as a method to select DADA2 cutoffs #3

Closed lorentzben closed 1 year ago

lorentzben commented 1 year ago

Using objective measurements is preferable to subjective methods and cutoffs are no different. Previously I have been using q-score cutoff of a value of 30 and a home-brewed cutoff detector. I came across the tool FIGARO which was developed to do the same process, I want to offer this as a choice or default behavior.