Closed HalseyWang closed 1 year ago
Thanks for the report! That’s a bug on my part but I won’t have a computer for the next few weeks. You can get around it by adding the line use_average_seq = 1
to your input file.
Thanks for the report! That’s a bug on my part but I won’t have a computer for the next few weeks. You can get around it by adding the line
use_average_seq = 1
to your input file.
Yes, I added the line use_average_seq = 1
in my input file.
The above is the error after I added the average base. LOL~
Best regards, Yue
Hi Yue,
Sorry, I completely forgot to look into this. I cannot reproduce this bug, that script works for me whether I set use_average_seq
to 1, 0, or don't set it at all. What kind of system are you on?
Hey @HalseyWang , since we are not able to reproduce the bug I'll close this issue. Feel free to reopen it and add more details if need be.
Thanks for the report! That’s a bug on my part but I won’t have a computer for the next few weeks. You can get around it by adding the line
use_average_seq = 1
to your input file.
where is "input file" sry this my first time use this
Thanks for the report! That’s a bug on my part but I won’t have a computer for the next few weeks. You can get around it by adding the line
use_average_seq = 1
to your input file.Yes, I added the line
use_average_seq = 1
in my input file. The above is the error after I added the average base. LOL~Best regards, Yue
HELLO! wang,
I sent u a email. My input file =“input” I found it in folder “simulation”
every time I put something I want to simulate, There will be a file called “input” in simulation. And I change“ use_average_seq=0” to “use_average_seq=1” ,it didnt work. After that, I check the input file,it recovered.
Am I find a wrong input file. Could u help please?
BEST WISHES
CHEN
Please open a new issue or discuss via email if your problem is not linked to this thread.
Please open a new issue or discuss via email if your problem is not linked to this thread.
yes,sir
Hello, I encountered this problem when using this script, how can I solve it, thank you very much!!! LOL
Traceback (most recent call last): File "/home/wangyue/.local/bin/oat", line 8, in
sys.exit(main())
File "/home/wangyue/.local/lib/python3.8/site-packages/oxDNA_analysis_tools/entry.py", line 24, in main
to_call.main()
File "/home/wangyue/.local/lib/python3.8/site-packages/oxDNA_analysis_tools/generate_force.py", line 50, in main
if (not inp["use_average_seq"] or inp.get_bool("use_average_seq")) and "RNA" in inp["interaction_type"]:
oxpy.core.OxDNAError: Key `use_average_seq' not found