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lorenzo-rovigatti / oxDNA

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
https://dna.physics.ox.ac.uk/
GNU General Public License v3.0
38 stars 26 forks source link

DNA-RNA hybrids #72

Closed lorenzo-rovigatti closed 8 months ago

lorenzo-rovigatti commented 8 months ago

Add the possibility of simulating DNA-RNA hybrids (by @eryykr )

lorenzo-rovigatti commented 8 months ago

While working on this branch, yesterday I have also added a few more tests that check the values of the energy terms present in a nicked double strand as computed by the DNA2, RNA2 and DNA_RNA force fields. These are run automatically every time a push is performed, but you can also run them manually with make test_run. Pinging @ErikPoppleton @sulcgroup: if you collaborate with someone who works on the code you can tell them to run the tests locally and check that their changes do not impact the core code.

These tests will end up in master as soon as we merge the branch (which will happen soon, hopefully)