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lorenzo-rovigatti
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oxDNA
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
https://dna.physics.ox.ac.uk/
GNU General Public License v3.0
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oxDNA_PDB.py: RMSF data -> tacoxdna
#40
elija-feigl
closed
2 years ago
0
[FEATURE REQUEST] oxdna-> pdb : RMSF feature from tacoxDNA
#39
elija-feigl
closed
2 years ago
0
Just a quick fix for oxView overlays
#38
simonecodispoti
closed
2 years ago
1
Clean up include paths for pybind11, python_defs.
#37
cgevans
closed
2 years ago
0
Strange relaxation trajectory
#36
RodenLuo
closed
2 years ago
14
Change libcommon.so to liboxdna_common.so (closes #33)
#35
cgevans
closed
2 years ago
1
Fix external_force_utils import in exclude_force.py.
#34
cgevans
closed
2 years ago
1
[BUG] CMake sets fixed path to libcommon.so in build directory / name complicates system-wide installation
#33
cgevans
closed
2 years ago
0
[BUG] ERROR: Cannot convert '0.' to a number
#32
RodenLuo
closed
2 years ago
2
Oxpy & oat not working on M1 Mac
#31
simonecodispoti
closed
1 year ago
43
[BUG] Compilation fails with AppleClang compiler
#30
ErikPoppleton
closed
2 years ago
3
Recompilation after `git pull`
#29
rkruegs123
closed
2 years ago
1
`restart_step_counter` is required when it shouldn't be
#28
rkruegs123
closed
2 years ago
0
`use_average_seq` error
#27
rkruegs123
closed
2 years ago
1
Discussion of relaxation in documentation
#26
rkruegs123
closed
2 years ago
5
`dt` missing from input file documentation
#25
rkruegs123
closed
2 years ago
2
PCA inconsistencies between paper, doc, and code
#24
RodenLuo
closed
2 years ago
1
Potential problems in the doc for oat clustering
#23
RodenLuo
closed
2 years ago
2
[BUG] K (kinetic energy) value difference between energy_file and the conf headers
#22
RodenLuo
closed
2 years ago
2
[BUG] python3.9 compile failure with oxpy
#21
supers1x
closed
2 years ago
10
Additional simulation parameters exposed via oxpy
#20
ErikPoppleton
closed
2 years ago
1
Joss submission
#19
ErikPoppleton
closed
2 years ago
0
observable_file input option
#18
zoombya
closed
2 years ago
2
[BUG] BaseForce has not attribute 'potential_grid' in ratio/angle MetaD
#17
mmguar
closed
2 years ago
8
Add support for the COM force to the CUDA backend
#16
lorenzo-rovigatti
closed
2 years ago
0
[BUG] input file problems in the MPI example
#15
zoombya
closed
3 years ago
1
CUDA simulation with multiple graphics cards
#14
HalseyWang
closed
2 years ago
1
[BUG] Failed compilation with Cuda and c++ 11.1.0
#13
mmguar
closed
3 years ago
6
More information on FSInteraction
#12
debeshmandal
closed
1 year ago
1
print history file in REMD at every step
#11
zoombya
closed
3 years ago
0
Templates remaining in contrib/romano
#10
Akodiat
closed
2 years ago
5
tmpfile() doesn't work when user does not have correct access privileges
#9
debeshmandal
closed
3 years ago
2
cudaThreadSynchronize is deprecated
#8
lorenzo-rovigatti
closed
3 years ago
10
Include python setup files in the root directory
#7
debeshmandal
closed
2 years ago
10
Make it possible to change parameters (temperature, density, number of particles) mid-simulation
#6
lorenzo-rovigatti
closed
2 years ago
2
Add Continous Integration to oxDNA
#5
lorenzo-rovigatti
closed
3 years ago
0
Changing the Python install of oxpy
#4
debeshmandal
closed
4 years ago
10
Initial Implementation of Continous Integration
#3
debeshmandal
closed
4 years ago
3
oxpy compile failure
#2
zoombya
closed
4 years ago
1
GPU speed-up for small systems
#1
bensonbits
closed
1 year ago
15
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