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lortizb / GENE8940

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Homework_3 #3

Open lortizb opened 5 years ago

lortizb commented 5 years ago

My goal of this exercise is to be more familiar with Genome annotation scripting.

lortizb commented 5 years ago

Report the command line input for the script and describe the results of your analysis. Finally, paste the URL to the script in the GitHub issue and report the Git revision that you used for your final analysis.

Command line input and output: [lo50936@teach GENE8940]$ sbatch HMW03_script Submitted batch job 18085 [lo50936@teach GENE8940]$ cd /work/gene8940/lo50936/ [lo50936@teach lo50936]$ ls HMW03 log.18085 [lo50936@teach lo50936]$ cat log.18085

seq len A C G T N cpg

total 4091782 985844 1062552 1058115 985271 0 319377 prcnt 1.0 0.2409 0.2597 0.2586 0.2408 0.0000 0.0781

seq len A C G T N cpg

total 562358 160229 120400 122221 159508 0 28053 prcnt 1.0 0.2849 0.2141 0.2173 0.2836 0.0000 0.0499 [lo50936@teach lo50936]$

The first file (CDS regions) contains 1062552 (25.97%) and 1058115 (25.86%) for C and G respectively. The second file (non CDS regions) contains 120400 (21.41%) and 122221(21.73%) for C and G respectively.

URL to the script in the GitHub issue: https://github.com/lortizb/GENE8940.git Git revision: commit 09f01e4be238a9de9cca5040fd55d8582a9ee1d1

Watson-40 commented 5 years ago

Excellent, your code completes all tasks as necessary! 10/10