Project progress update (week2)

lortizb / GENE8940

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Project progress update (week2) #8

Open lortizb opened 4 years ago

lortizb commented 4 years ago

Weekly progress update of my project

lortizb commented 4 years ago

Activities done:

1-Copied all raw data into a Sapelo2 file called "Nanopore". In this forder I have all the files obtained during the run, but I will use only the fastq files that passess the QC (above 10). 2-Used Porechop to demultiplex samples. It worked very well. I have 10 different folders (one for each sample). 3-I am working in the Canu script to perform the assembly for each sample.

cbergman commented 4 years ago

good progress for first update 2/2
please provide links to your code and location of files on the cluster in your next update.