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losonczylab / roibuddy

SIMA ROI Editing and Registration Tool
GNU General Public License v2.0
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Roibuddy failed install on Mac... #16

Closed garretstuber closed 9 years ago

garretstuber commented 9 years ago

When trying to install roibuddy via pip, errors always appear to be generated. here is the output. Any ideas on how to solve this would be greatly appreciated. Thanks.

wire152019015140:~ gstuber$ pip install roibuddy --allow-unverified guiqwt Collecting roibuddy Using cached roibuddy-1.0.0-py2-none-any.whl Collecting guiqwt>=2.1.6 (from roibuddy) guiqwt is potentially insecure and unverifiable. Downloading http://guiqwt.googlecode.com/files/guiqwt-2.3.1.zip (3.1MB) 100% |████████████████████████████████| 3.1MB 11.8MB/s Requirement already satisfied (use --upgrade to upgrade): guidata>=1.4.1 in ./anaconda/lib/python2.7/site-packages (from roibuddy) Requirement already satisfied (use --upgrade to upgrade): sima in ./anaconda/lib/python2.7/site-packages (from roibuddy) Requirement already satisfied (use --upgrade to upgrade): numpy>=1.8 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): scipy>=0.13.0 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): scikit-image>=0.9.3 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): shapely>=1.2.14 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): scikit-learn>=0.11 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): pillow>=2.6.1 in ./anaconda/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): future>=0.14 in ./.local/lib/python2.7/site-packages (from sima->roibuddy) Requirement already satisfied (use --upgrade to upgrade): six>=1.3 in ./anaconda/lib/python2.7/site-packages (from scikit-image>=0.9.3->sima->roibuddy) Installing collected packages: guiqwt, roibuddy Running setup.py install for guiqwt Complete output from command /Users/gstuber/anaconda/bin/python -c "import setuptools, tokenize;file='/private/var/folders/pf/kc8qz5m12gb2w3c0dmt5mfpw0000gn/T/pip-build-_3jNCO/guiqwt/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /var/folders/pf/kc8qz5m12gb2w3c0dmt5mfpw0000gn/T/pip-lOdeej-record/install-record.txt --single-version-externally-managed --compile:

Error compiling Cython file:
------------------------------------------------------------
...
from cpython.ref cimport PyObject, PyTypeObject
^
------------------------------------------------------------

/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Includes/cpython/object.pxd:1:0: Compiler crash in AnalyseDeclarationsTransform

File 'ModuleNode.py', line 104, in analyse_declarations: ModuleNode(object.pxd:1:0,
    full_module_name = u'cpython.object',
    is_pxd = True)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(object.pxd:1:0)
File 'Nodes.py', line 7197, in analyse_declarations: FromCImportStatNode(object.pxd:1:0,
    imported_names = [...]/2,
    module_name = u'cpython.ref')

Compiler crash traceback from this point on:
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 7197, in analyse_declarations
    module_scope = env.find_module(self.module_name, self.pos, relative_level=self.relative_level)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Symtab.py", line 1130, in find_module
    module_name, relative_to=None if relative_level == 0 else self.parent_module, pos=pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 138, in find_module
    pxd_pathname = self.find_pxd_file(qualified_name, pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 190, in find_pxd_file
    pxd = self.search_include_directories(qualified_name, ".pxd", pos, sys_path=True)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 231, in search_include_directories
    tuple(self.include_directories), qualified_name, suffix, pos, include, sys_path)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 22, in wrapper
    res = cache[args] = f(*args)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 111, in search_include_directories
    path = os.path.join(dir, dotted_filename)
  File "/Users/gstuber/anaconda/lib/python2.7/posixpath.py", line 80, in join
    path += '/' + b
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 81: ordinal not in range(128)

Error compiling Cython file:
------------------------------------------------------------
...

DEF _buffer_format_string_len = 255

cimport cpython.buffer as pybuf
from cpython.ref cimport Py_INCREF, Py_XDECREF
from cpython.object cimport PyObject
^
------------------------------------------------------------

/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd:21:0: Compiler crash in AnalyseDeclarationsTransform

File 'ModuleNode.py', line 104, in analyse_declarations: ModuleNode(__init__.pxd:1:0,
    full_module_name = u'numpy',
    is_pxd = True)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(__init__.pxd:17:0)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(__init__.pxd:21:0)
File 'Nodes.py', line 7217, in analyse_declarations: FromCImportStatNode(__init__.pxd:21:0,
    imported_names = [...]/1,
    module_name = u'cpython.object')

Compiler crash traceback from this point on:
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 7217, in analyse_declarations
    submodule_scope = env.context.find_module(name, relative_to=module_scope, pos=self.pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 138, in find_module
    pxd_pathname = self.find_pxd_file(qualified_name, pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 190, in find_pxd_file
    pxd = self.search_include_directories(qualified_name, ".pxd", pos, sys_path=True)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 231, in search_include_directories
    tuple(self.include_directories), qualified_name, suffix, pos, include, sys_path)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 22, in wrapper
    res = cache[args] = f(*args)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 111, in search_include_directories
    path = os.path.join(dir, dotted_filename)
  File "/Users/gstuber/anaconda/lib/python2.7/posixpath.py", line 80, in join
    path += '/' + b
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 81: ordinal not in range(128)

Error compiling Cython file:
------------------------------------------------------------
...
                double i0, double i1, double j0, double j1,
                np.ndarray[double, ndim=2] data, logscale):
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i
    cdef unsigned int n = X.shape[0]
                          ^
------------------------------------------------------------

src/histogram2d.pyx:25:27: Cannot select attribute of incomplete type 'ndarray[double,ndim=1]'

Error compiling Cython file:
------------------------------------------------------------
...
                np.ndarray[double, ndim=2] data, logscale):
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i
    cdef unsigned int n = X.shape[0]
    cdef unsigned int nx = data.shape[1]
                              ^
------------------------------------------------------------

src/histogram2d.pyx:26:31: Cannot select attribute of incomplete type 'ndarray[double,ndim=2]'

Error compiling Cython file:
------------------------------------------------------------
...
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i
    cdef unsigned int n = X.shape[0]
    cdef unsigned int nx = data.shape[1]
    cdef unsigned int ny = data.shape[0]
                              ^
------------------------------------------------------------

src/histogram2d.pyx:27:31: Cannot select attribute of incomplete type 'ndarray[double,ndim=2]'

Error compiling Cython file:
------------------------------------------------------------
...
                     np.ndarray[double, ndim=2] data_tmp,
                     np.ndarray[double, ndim=2] data, int computation):
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i, u, v
    cdef unsigned int n = X.shape[0]
                          ^
------------------------------------------------------------

src/histogram2d.pyx:62:27: Cannot select attribute of incomplete type 'ndarray[double,ndim=1]'

Error compiling Cython file:
------------------------------------------------------------
...
                     np.ndarray[double, ndim=2] data, int computation):
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i, u, v
    cdef unsigned int n = X.shape[0]
    cdef unsigned int nx = data.shape[1]
                              ^
------------------------------------------------------------

src/histogram2d.pyx:63:31: Cannot select attribute of incomplete type 'ndarray[double,ndim=2]'

Error compiling Cython file:
------------------------------------------------------------
...
    """Compute 2-D Histogram from data X, Y"""
    cdef double cx, cy, nmax, ix, iy
    cdef unsigned int i, u, v
    cdef unsigned int n = X.shape[0]
    cdef unsigned int nx = data.shape[1]
    cdef unsigned int ny = data.shape[0]
                              ^
------------------------------------------------------------

src/histogram2d.pyx:64:31: Cannot select attribute of incomplete type 'ndarray[double,ndim=2]'

Error compiling Cython file:
------------------------------------------------------------
...
from cpython.ref cimport PyObject, PyTypeObject
^
------------------------------------------------------------

/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Includes/cpython/object.pxd:1:0: Compiler crash in AnalyseDeclarationsTransform

File 'ModuleNode.py', line 104, in analyse_declarations: ModuleNode(object.pxd:1:0,
    full_module_name = u'cpython.object',
    is_pxd = True)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(object.pxd:1:0)
File 'Nodes.py', line 7197, in analyse_declarations: FromCImportStatNode(object.pxd:1:0,
    imported_names = [...]/2,
    module_name = u'cpython.ref')

Compiler crash traceback from this point on:
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 7197, in analyse_declarations
    module_scope = env.find_module(self.module_name, self.pos, relative_level=self.relative_level)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Symtab.py", line 1130, in find_module
    module_name, relative_to=None if relative_level == 0 else self.parent_module, pos=pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 138, in find_module
    pxd_pathname = self.find_pxd_file(qualified_name, pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 190, in find_pxd_file
    pxd = self.search_include_directories(qualified_name, ".pxd", pos, sys_path=True)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 231, in search_include_directories
    tuple(self.include_directories), qualified_name, suffix, pos, include, sys_path)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 22, in wrapper
    res = cache[args] = f(*args)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 111, in search_include_directories
    path = os.path.join(dir, dotted_filename)
  File "/Users/gstuber/anaconda/lib/python2.7/posixpath.py", line 80, in join
    path += '/' + b
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 81: ordinal not in range(128)

Error compiling Cython file:
------------------------------------------------------------
...

DEF _buffer_format_string_len = 255

cimport cpython.buffer as pybuf
from cpython.ref cimport Py_INCREF, Py_XDECREF
from cpython.object cimport PyObject
^
------------------------------------------------------------

/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd:21:0: Compiler crash in AnalyseDeclarationsTransform

File 'ModuleNode.py', line 104, in analyse_declarations: ModuleNode(__init__.pxd:1:0,
    full_module_name = u'numpy',
    is_pxd = True)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(__init__.pxd:17:0)
File 'Nodes.py', line 415, in analyse_declarations: StatListNode(__init__.pxd:21:0)
File 'Nodes.py', line 7217, in analyse_declarations: FromCImportStatNode(__init__.pxd:21:0,
    imported_names = [...]/1,
    module_name = u'cpython.object')

Compiler crash traceback from this point on:
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 7217, in analyse_declarations
    submodule_scope = env.context.find_module(name, relative_to=module_scope, pos=self.pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 138, in find_module
    pxd_pathname = self.find_pxd_file(qualified_name, pos)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 190, in find_pxd_file
    pxd = self.search_include_directories(qualified_name, ".pxd", pos, sys_path=True)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 231, in search_include_directories
    tuple(self.include_directories), qualified_name, suffix, pos, include, sys_path)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 22, in wrapper
    res = cache[args] = f(*args)
  File "/Users/gstuber/anaconda/lib/python2.7/site-packages/Cython/Utils.py", line 111, in search_include_directories
    path = os.path.join(dir, dotted_filename)
  File "/Users/gstuber/anaconda/lib/python2.7/posixpath.py", line 80, in join
    path += '/' + b
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 81: ordinal not in range(128)
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "guiqwt.histogram2d" sources
building extension "guiqwt.mandelbrot" sources
building extension "guiqwt._scaler" sources
build_src: building npy-pkg config files
running build_py
creating build
creating build/lib.macosx-10.5-x86_64-2.7
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/_cm.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/annotations.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/baseplot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/builder.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/colormap.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/config.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/cross_section.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/curve.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/debug.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/events.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/geometry.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/histogram.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/image.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/interfaces.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/io.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/label.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/panels.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/plot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/pyplot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/qtdesigner.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/qthelpers.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/scaler.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/shapes.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/signals.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/styles.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/tools.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
copying guiqwt/transitional.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/benchmarks.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/computations.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/contrast.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/cross_section.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/cross_section_oblique.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/cursors.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/customize_shape_tool.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/filtertest1.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/filtertest2.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/fit.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/fliprotate.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/fontparam.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/get_point.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/get_segment.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/highprecisionxy.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/hist2d.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/hist2d_func.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/histogram.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/image.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/image_masked.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/image_plot_tools.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/image_rgb.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/imagefilter.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/imagesuperp.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/imagexy.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/loadsaveitems_hdf5.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/loadsaveitems_pickle.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/manager.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/mandelbrot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/pcolor.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/plot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/plot_log.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/plot_yreverse.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/polygons.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/pyplot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/qtdesigner.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/resize.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/rotatecrop.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/sift.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/simple_dialog.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/simple_window.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/styles.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/syncplot.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/test_line.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/transform.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/base.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/fit.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/fliprotate.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/resizedialog.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
copying guiqwt/widgets/rotatecrop.py -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/widgets
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/arrow_down.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/arrow_up.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/autorefresh.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/axes.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/center.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/contrast.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/copytoclipboard.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csapplylut.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csautoscale.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csection.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csection_a.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csection_oblique.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/csperimage.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/eliminate_outliers.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/eraser.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/export.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/font.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/full_range.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/funct.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/guiqwt.svg -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/hcursor.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/hflip.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/imagestats.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/item_list.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/magnifier.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/move.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/on_curve.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/point_selection.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/print.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/refresh.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/sift.svg -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/snapshot.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/trash.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/vcursor.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/vflip.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/xcursor.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
copying guiqwt/images/xrange.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvestyles
copying guiqwt/images/curvestyles/dots.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvestyles
copying guiqwt/images/curvestyles/lines.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvestyles
copying guiqwt/images/curvestyles/steps.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvestyles
copying guiqwt/images/curvestyles/sticks.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvestyles
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvetypes
copying guiqwt/images/curvetypes/xfy.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvetypes
copying guiqwt/images/curvetypes/yfx.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/curvetypes
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/annotation.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/curve.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/errorbar.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/grid.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/histogram.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/histogram2d.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/image.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/label.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
copying guiqwt/images/items/legend.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/items
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/cross.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/diamond.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/ellipse.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/hexagon.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/point.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/square.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/star.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/triangle_d.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/triangle_l.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/triangle_r.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/triangle_u.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
copying guiqwt/images/markers/xcross.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markers
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markerstyles
copying guiqwt/images/markerstyles/cross_marker.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markerstyles
copying guiqwt/images/markerstyles/horiz_marker.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markerstyles
copying guiqwt/images/markerstyles/vert_marker.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/markerstyles
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
copying guiqwt/images/mask/mask_circle.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
copying guiqwt/images/mask/mask_circle_outside.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
copying guiqwt/images/mask/mask_rectangle.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
copying guiqwt/images/mask/mask_rectangle_outside.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
copying guiqwt/images/mask/mask_tool.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/mask
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/bdiagpattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/crosspattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense1pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense2pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense3pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense4pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense5pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense6pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/dense7pattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/diagcrosspattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/fdiagpattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/horpattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/nobrush.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/solidpattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
copying guiqwt/images/patterns/verpattern.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/patterns
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/scales
copying guiqwt/images/scales/lin_lin.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/scales
copying guiqwt/images/scales/lin_log.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/scales
copying guiqwt/images/scales/log_lin.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/scales
copying guiqwt/images/scales/log_log.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/scales
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/circle.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/ellipse_shape.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/freeform.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/gtaxes.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/marker.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/oblique_rectangle.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/point_shape.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/polyline.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/rectangle.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
copying guiqwt/images/shapes/segment.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/shapes
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
copying guiqwt/images/styles/dash.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
copying guiqwt/images/styles/dashdot.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
copying guiqwt/images/styles/dashdotdot.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
copying guiqwt/images/styles/dot.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
copying guiqwt/images/styles/solid.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/images/styles
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/locale
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/locale/fr
creating build/lib.macosx-10.5-x86_64-2.7/guiqwt/locale/fr/LC_MESSAGES
copying guiqwt/locale/fr/LC_MESSAGES/guiqwt.mo -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/locale/fr/LC_MESSAGES
copying guiqwt/tests/brain.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/brain_cylinder.png -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
copying guiqwt/tests/qtdesigner.ui -> build/lib.macosx-10.5-x86_64-2.7/guiqwt/tests
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'guiqwt.histogram2d' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -I/Users/gstuber/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating build/temp.macosx-10.5-x86_64-2.7
creating build/temp.macosx-10.5-x86_64-2.7/src
compile options: '-I/Users/gstuber/anaconda/lib/python2.7/site-packages/numpy/core/include -I/Users/gstuber/anaconda/lib/python2.7/site-packages/numpy/core/include -I/Users/gstuber/anaconda/include/python2.7 -c'
gcc: src/histogram2d.c
src/histogram2d.c:1:2: error: Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
 ^
1 error generated.
src/histogram2d.c:1:2: error: Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
 ^
1 error generated.
error: Command "gcc -fno-strict-aliasing -I/Users/gstuber/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/gstuber/anaconda/lib/python2.7/site-packages/numpy/core/include -I/Users/gstuber/anaconda/lib/python2.7/site-packages/numpy/core/include -I/Users/gstuber/anaconda/include/python2.7 -c src/histogram2d.c -o build/temp.macosx-10.5-x86_64-2.7/src/histogram2d.o" failed with exit status 1

----------------------------------------
Command "/Users/gstuber/anaconda/bin/python -c "import setuptools, tokenize;__file__='/private/var/folders/pf/kc8qz5m12gb2w3c0dmt5mfpw0000gn/T/pip-build-_3jNCO/guiqwt/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/pf/kc8qz5m12gb2w3c0dmt5mfpw0000gn/T/pip-lOdeej-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/pf/kc8qz5m12gb2w3c0dmt5mfpw0000gn/T/pip-build-_3jNCO/guiqwt

wire152019015140:~ gstuber$

pkaifosh commented 9 years ago

It looks like the problem is with installing guiqwt. (We recommend installing this package separately before attempting to install roibuddy with pip http://www.losonczylab.org/sima/1.2/roi_buddy.html#mac-os-x.) Looking through the error messages, the root of the problem appears to be that the Cython compilation of the histogram2d.pyx file into histogram2d.c has failed. If you download the zip file from the guidata downloads site (see link above, which in turn has a link to there), then it already contains a compiled histogram2d.c file, and so this step should be avoidable. Please let us know if that fixes your issue.

garretstuber commented 9 years ago

also - it guidata installs fine. the problem with histogram2d.pyx is coming from the guiqwt install. I get that cython compiler error every which way I try it.

On May 7, 2015, at 10:02 AM, Garret Stuber gstuber@gmail.com wrote:

Thanks for your help Patrick - unfortunately, there is still the issue with histogram2d, even when I installed directly from the .zip file. Here is the new log, if you have any other though

On May 6, 2015, at 9:26 PM, Patrick Kaifosh notifications@github.com wrote:

It looks like the problem is with installing guiqwt. (We recommend installing this package separately before attempting to install roibuddy with pip http://www.losonczylab.org/sima/1.2/roi_buddy.html#mac-os-x. http://www.losonczylab.org/sima/1.2/roi_buddy.html#mac-os-x.) Looking through the error messages, the root of the problem appears to be that the Cython compilation of the histogram2d.pyx file into histogram2d.c has failed. If you download the zip file from the guidata downloads site (see link above, which in turn has a link to there), then it already contains a compiled histogram2d.c file, and so this step should be avoidable. Please let us know if that fixes your issue.

— Reply to this email directly or view it on GitHub https://github.com/losonczylab/roibuddy/issues/16#issuecomment-99669235.

pkaifosh commented 9 years ago

Can you please confirm that you get this error when downloading the installing guiqwt zip file separately from the pip install sima, and then installing it by running setup.py?

@nbdanielson @jzaremba How have you installed guiqwt on your Mac laptops?

garretstuber commented 9 years ago

I think I finally found the culprit - guiqwt is installing to my system python, not to anaconda for some reason. I am working on fixing that, and will let you know if that works. We were able to get everything running on a linux box, so we are hopefully good to go. Thanks again - I really appreciate your help.

Garret

On May 7, 2015, at 12:02 PM, Patrick Kaifosh notifications@github.com wrote:

Can you please confirm that you get this error when downloading the installing guiqwt zip file separately from the pip install sima, and then installing it by running setup.py?

@nbdanielson https://github.com/nbdanielson @jzaremba https://github.com/jzaremba How have you installed guiqwt on your Mac laptops?

— Reply to this email directly or view it on GitHub https://github.com/losonczylab/roibuddy/issues/16#issuecomment-99922440.

pkaifosh commented 9 years ago

Did this work? Can we close the issue?

garretstuber commented 9 years ago

Yes, it working great now. Thanks for your help.

Garret

On Aug 13, 2015, at 9:03 AM, Patrick Kaifosh notifications@github.com wrote:

Did this work? Can we close the issue?

— Reply to this email directly or view it on GitHub.