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losonczylab
/
sima
Python package for analysis of dynamic fluorescence microscopy data
GNU General Public License v2.0
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HiddenMarkov2D fails
#256
mcongiu
opened
4 years ago
0
motion correction in 3D and no time dimension
#255
akatav
opened
4 years ago
0
Python 3.7 issue creating Tiff sequences and ROI object
#254
Saksham20
opened
4 years ago
0
installation broken in python 3.7
#253
bendichter
opened
4 years ago
7
Motion correction of image stacks from different focal planes along Z-axis
#252
akatav
opened
4 years ago
0
Fixed citation in README
#251
SebastianOltmanns
closed
5 years ago
3
Optionally apply Gaussian blur & Laplacian before dftreg
#250
neurodroid
closed
5 years ago
1
Dft mc
#249
james-priestley
opened
6 years ago
1
Added option to save multiplane data as interlaced tiffs
#248
james-priestley
closed
6 years ago
1
OSX py35 build failing
#247
jzaremba
opened
6 years ago
0
Check if paths to sequence data refer to same file
#246
neurodroid
closed
6 years ago
1
Scanbox
#245
jzaremba
closed
6 years ago
0
CI fixes and sequence math
#244
jzaremba
closed
6 years ago
0
Constant sequences and experimental sequence math
#243
jzaremba
closed
6 years ago
1
DiscreteFourier2D type error
#242
swkeemink
closed
5 years ago
3
pass method kwargs to _align_frames when processing in parallel mode
#241
9sdv
closed
6 years ago
0
Allow passing of method_kwargs to plane_translation2d
#240
sebiRolotti
closed
6 years ago
0
Whole frame
#239
sebiRolotti
closed
6 years ago
0
Imagej
#238
sebiRolotti
closed
6 years ago
0
HMM motion correction fails on Windows 10 with n_processes > 1
#237
hluetck
opened
7 years ago
0
Errors when exporting motion-corrected frames with large size (>4GB) using Sima
#236
yatangli
opened
7 years ago
0
New sequences
#235
9sdv
opened
7 years ago
0
Replace opencv url
#234
JiangXL
closed
7 years ago
1
added support for numpy memmap sequences
#233
9sdv
closed
7 years ago
2
Lock OSX image to 10.10
#232
jzaremba
closed
7 years ago
1
OSX builds fail for py3.5
#231
jzaremba
closed
7 years ago
1
Updated documentation for available shortcuts for ROI Buddy.
#230
angelc134
closed
7 years ago
2
import single channel tiff
#229
niallmacq
closed
7 years ago
11
Linux builds should make eggs, not wheels
#228
nbdanielson
opened
8 years ago
0
updated version numbers for 1.3.2
#227
nbdanielson
closed
8 years ago
0
Affine processed 3
#226
Andres9713
closed
8 years ago
0
Travis/Appveyor updates
#225
jzaremba
closed
8 years ago
0
couldn't import sima after installation
#224
20052103
opened
8 years ago
0
Doc updates
#223
jzaremba
closed
8 years ago
0
restructuring of Travis CI, now including os-x builds
#222
nbdanielson
closed
8 years ago
0
affine-processed for roi buddy
#221
Andres9713
closed
8 years ago
1
Added Dockerfile, additional Appveyor builds, updated workflow.py
#220
jzaremba
closed
8 years ago
1
Issue with running the example spike inference code
#219
vjlbym
opened
8 years ago
2
Crash with granularity='frame'
#218
dgoodwin208
opened
8 years ago
3
export_frames now implements the 'scale_values' argument
#217
nbdanielson
closed
8 years ago
1
Possible memory leak during motion correction
#216
vjlbym
opened
8 years ago
12
Problem running example dataset
#215
timeaeltes
closed
8 years ago
8
warnings.warn('Could not align all frames.') and warnings.warn('No finite observation probabilities.')
#214
rzemla
closed
8 years ago
6
Round displacements and then cast to int during DFT registration.
#213
neurodroid
closed
8 years ago
4
construct a MultiPageTIFF: Error
#212
ObadaM
opened
8 years ago
3
first attempt at os-x CI
#211
nbdanielson
closed
8 years ago
0
ROIBuddy Cannot load
#210
Ron89
closed
8 years ago
1
EC2 launch scripts for SIMA
#209
vjlbym
closed
8 years ago
6
Example workflow as an iPython notebook
#208
jzaremba
closed
8 years ago
1
Added standard deviation and a fourth moment (like kurtosis) projection to export_averages
#207
vjlbym
closed
8 years ago
16
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