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loukesio / ggvolc

𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation
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Cannot run ggvolc function #1

Closed dpolychr closed 1 year ago

dpolychr commented 1 year ago

Hi @loukesio,

Many thanks for this package

I've installed version 0.1.0 but when running the example for all genes the function cannot be found:

library(ggvolc)

> ggvolc(all_genes)
Error in ggvolc(all_genes) : could not find function "ggvolc"

An advice why this might be?

Below is my sessionInfo


sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Ventura 13.6

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggvolc_0.1.0

loaded via a namespace (and not attached):
 [1] pillar_1.9.0        compiler_4.2.2      base64enc_0.1-3     tools_4.2.2        
 [5] aws.s3_0.3.21       digest_0.6.33       bit_4.0.5           RSQLite_2.3.1      
 [9] memoise_2.0.1       lifecycle_1.0.3     tibble_3.2.1        gtable_0.3.4       
[13] pkgconfig_2.0.3     rlang_1.1.1         cli_3.6.1           DBI_1.1.3          
[17] rstudioapi_0.15.0   patchwork_1.1.2     curl_5.1.0          fastmap_1.1.1      
[21] gridExtra_2.3       dplyr_1.1.3         httr_1.4.7          xml2_1.3.5         
[25] generics_0.1.3      vctrs_0.6.3         EnvStats_2.8.1      bit64_4.0.5        
[29] grid_4.2.2          tidyselect_1.2.0    glue_1.6.2          R6_2.5.1           
[33] fansi_1.0.5         purrr_1.0.2         ggplot2_3.4.3       blob_1.2.4         
[37] magrittr_2.0.3      scales_1.2.1        assertthat_0.2.1    aws.signature_0.6.0
[41] colorspace_2.1-0    arrow_13.0.0.1      utf8_1.2.3          munsell_0.5.0      
[45] cachem_1.0.8
loukesio commented 1 year ago

Good morning Dimitri,

Thank you for letting me know about this matter. I appreciate you informing me.

I will review the details over the weekend and follow up with you on Monday to provide an update. Please let me know if you need anything else in the meantime.

Have a great weekend!

loukesio commented 1 year ago

Dimitri, could you check again if it works? it works for me! There were some hidden files causing the problem

dpolychr commented 1 year ago

Works now Louka @loukesio, cheers 👋