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lowe-lab-ucl / cellx-predict

Explainable AI model of cell behavior
BSD 3-Clause "New" or "Revised" License
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add notebook to demonstrate patch saving in tfrecord format #32

Open quantumjot opened 2 years ago

quantumjot commented 2 years ago

Would be good to have a notebook that takes patch images and writes them out as a tfrecord file for training the VAE.

quantumjot commented 2 years ago

We should use the cellx library for this:

https://github.com/quantumjot/cellx/blob/53015f8a45c8fc7236fe382431f8f55f6edf08c4/cellx/tools/dataset.py#L24-L37