search

lozuponelab / AMON

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
MIT License
21 stars 11 forks source link

Error after install #5

Closed cfsancas closed 4 years ago

cfsancas commented 5 years ago

Hello, I installed AMON in HPC cluster with conda and yalm file and I get these error:

/home/csanchez/.conda/envs/AMON/bin/amon.py: line 1: import: command not found
/home/csanchez/.conda/envs/AMON/bin/amon.py: line 3: from: command not found
/home/csanchez/.conda/envs/AMON/bin/amon.py: line 6: syntax error near unexpected token `('
/home/csanchez/.conda/envs/AMON/bin/amon.py: line 6: `    parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter)'

If I go to the environment folder and I execute python amon.py it works. So maybe it's a problem with environment setup

kthurimella commented 4 years ago

Hi @cfsancas thanks for bringing this issue up. We are currently working on a fix to this and will keep you posted. Looping in @shafferm as well.

kthurimella commented 4 years ago

Hi @cfsancas this should be fixed with the latest push.