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lozuponelab / SCNIC

Sparse Cooccurence Network Investigation for Compositional data
BSD 3-Clause "New" or "Revised" License
22 stars 12 forks source link

Conda install not working #18

Closed afvrbanac closed 1 year ago

afvrbanac commented 3 years ago

Hello, just tried to install both on my local machine (mac) and on a linux aws machine. Both have miniconda with the bioconda channel added.

Running: conda create -n SCNIC python=3 scnic

Gives the error: Package python conflicts for: scnic -> python[version='>=3'] python=3 scnic -> biom-format -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|3.4.|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.6|>=3.5']

afvrbanac commented 3 years ago

Was able to install by creating an conda env with only python 3, installing numpy and cython in that env (pip install of SCNIC errored until these were installed), then pip installing SCNIC

kthurimella commented 3 years ago

Thanks for raising the issue @afvrbanac, it looks like the conda install isn't working but the pip install in general should work, even if you install it within a virtual env that you create.