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lozuponelab / SCNIC

Sparse Cooccurence Network Investigation for Compositional data
BSD 3-Clause "New" or "Revised" License
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issue with SCNIC between #26

Open sudhiron11 opened 5 months ago

sudhiron11 commented 5 months ago

Hey.. I am running SCNIC to create network between two different tables (bacterial and fungal abundances). I am using SCNIC between (SCNIC_analysis.py between ). Every time I run into this error. I also tried q2 plugin, which is also running into something similar. Can you please help me.

Thank you in advance!!

I am pasting the command and the error here: (SCNIC) [sudhir@localhost BETWEEN_CORR]$ SCNIC_analysis.py between -1 BACTERIA_6_OUT/feature-table.biom -2 FUNGAL_6_OUT/feature-table.biom -o BETWEEN_CORRELATION Traceback (most recent call last): File "/home/sudhir/miniconda3/envs/SCNIC/bin/SCNIC_analysis.py", line 81, in main() File "/home/sudhir/miniconda3/envs/SCNIC/bin/SCNIC_analysis.py", line 77, in main args.func(**args_dict)

sterrettJD commented 2 months ago

Hey @sudhiron11 , if you're still running into this issue, what version of SCNIC are you using? It turns out that the most recent updates had not pushed to PyPI or conda, but it should work now. Can you try with SCNIC v0.6.6?

Thanks, John