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lpantano / seqcluster

small RNA analysis from NGS data
http://seqcluster.readthedocs.io
MIT License
35 stars 17 forks source link

metadata_fn in report picks up operating system artifacts #15

Closed ro6ert closed 8 years ago

ro6ert commented 8 years ago

Hello Lorena,

I edited the summary.csv file and produced a new file with a tilde. This messed up the downstream processing of the report. Maybe the pattern could be changed to prevent this? (I just deleted the other file as a fix)

metadata_fn = list.files(file.path(root_path), pattern = "summary.csv",recursive = T, full.names = T)

metadata_fn [1] "/redacted/sampleconfig/final/2016-04-19_sampleconfig/report/summary.csv" [2] "/redacted/sampleconfig/final/2016-04-19_sampleconfig/report/summary.csv~"

lpantano commented 8 years ago

thanks for the tip, hopefully this change fixed this case.