Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.
Downloading the pvog files can take some time, and if they are already downloaded, I thought it might be worth allowing the user to confirm before re-downloading and overwriting. I suggest a simple implementation, let me know what you think, thank you!
Also, very minor edit, but builtins.input() always returns a string (like input() in Python 3), so I removed the unnecessary call.
lpenguin
commented
7 years ago
Downloading the pvog files can take some time, and if they are already downloaded, I thought it might be worth allowing the user to confirm before re-downloading and overwriting. I suggest a simple implementation, let me know what you think, thank you!
Also, very minor edit, but
builtins.input()alwaysreturns a string (likeinput()in Python 3), so I removed the unnecessary call.