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lpollonini / qt-nirs

QT-NIRS: Quality Testing of Near Infrared Scans
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Use qt-nirs/nirsplot in combination with homer3 #9

Open scholzri opened 8 months ago

scholzri commented 8 months ago

Hi, is there a way to annotate/exclude time windows in homer3 that have an sci or pp value under a specific threshold on a channel-by-channel basis, so that these time windows for the specific channels can be excluded for further analysis?

HaolunLUO commented 7 months ago

Did you figure out how to do this? I have the same question.

lpollonini commented 7 months ago

Hello both, and sorry for the late reply. I think that @smonterohdz was working on this issue specifically, and he may have a prompt answer. Meanwhile, let me ask for clarification...you wish to exclude different time windows in different channels, as opposed to the same corrupted window across all channels, correct?

smonterohdz commented 7 months ago

Hi, yes, we have an initial qtnirs-Homer3 function that you can use to prune channels. We are still working on excluding time segments to inform Homer3 and exclude them from the posterior analysis.