Open peterdfields opened 6 years ago
Can you make sure the LAST-aligner (lastal) is correctly installed in your system?
It appears to be. I get the following output when executing lastal on the terminal:
lastal: please give me a database name and sequence file(s)
Usage: lastal [options] lastdb-name fasta-sequence-file(s)
can you list test dir ls -lah test/
?
Hi I've got the same error. I did ls -lah test/ and I got this: otal 2,8M drwxr-xr-x 2 shinojosa molevol 4,0K jul 12 12:24 . drwxr-xr-x 7 shinojosa molevol 4,0K jul 12 12:39 .. -rw-r--r-- 1 shinojosa molevol 173K jul 12 12:24 contigs.fa -rw-r--r-- 1 shinojosa molevol 98K jul 12 12:24 contigs.reduced.fa -rw-r--r-- 1 shinojosa molevol 622K jul 12 12:24 nanopore.fa.gz -rw-r--r-- 1 shinojosa molevol 1,8M jul 12 12:24 pacbio.fq.gz -rw-r--r-- 1 shinojosa molevol 100K jul 12 12:24 ref.fa
Hi,
I'm trying to run the example commands and getting the following error:
It doesn't seem to matter whether I build the software from github or use pip/bioconda for installation.
The computer is running Ubuntu 16.04 and python 2.7.6