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lpsinger / ligo.skymap

Localization of gravitational-wave transients. Mirror of https://git.ligo.org/lscsoft/ligo.skymap
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Wheel error during ligo.skymap installation #15

Closed juliagrotova closed 1 year ago

juliagrotova commented 1 year ago

Hello! I'm trying to install ligo.skymap with pip, however, I get errors on the stage of building wheels for collected packages: ligo-segments, python-ligo-lw, lscsoft-glue. I tried the solutions described in similar situations, but it didn't work. Could you please help me to solve it?

Here is my Terminal output (sorry if it's too long):

Building wheels for collected packages: ligo-segments, python-ligo-lw, lscsoft-glue Building wheel for ligo-segments (setup.py) ... error error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [19 lines of output] /usr/local/lib/python3.8/site-packages/setuptools/dist.py:286: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). warnings.warn(msg, SetuptoolsDeprecationWarning) running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.15-x86_64-cpython-38 creating build/lib.macosx-10.15-x86_64-cpython-38/ligo copying ligo/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo creating build/lib.macosx-10.15-x86_64-cpython-38/ligo/segments copying ligo/segments/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/segments copying ligo/segments/utils.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/segments running build_ext building 'ligo.segments.__segments' extension creating build/temp.macosx-10.15-x86_64-cpython-38 creating build/temp.macosx-10.15-x86_64-cpython-38/src clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -Isrc -I/usr/local/opt/python@3.8/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c src/infinity.c -o build/temp.macosx-10.15-x86_64-cpython-38/src/infinity.o xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun error: command '/usr/bin/clang' failed with exit code 1 [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for ligo-segments Running setup.py clean for ligo-segments Building wheel for python-ligo-lw (setup.py) ... error error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [36 lines of output] /usr/local/lib/python3.8/site-packages/setuptools/dist.py:286: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). warnings.warn(msg, SetuptoolsDeprecationWarning) running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.15-x86_64-cpython-38 creating build/lib.macosx-10.15-x86_64-cpython-38/ligo copying ligo/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo creating build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/ligolw.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/lsctables.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/param.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/types.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/dbtables.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/table.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw copying ligo/lw/array.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw creating build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/ligolw_add.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/search_summary.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/ilwd.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/segments.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/ligolw_sqlite.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/coincs.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/process.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils copying ligo/lw/utils/time_slide.py -> build/lib.macosx-10.15-x86_64-cpython-38/ligo/lw/utils running build_ext building 'ligo.lw.tokenizer' extension creating build/temp.macosx-10.15-x86_64-cpython-38 creating build/temp.macosx-10.15-x86_64-cpython-38/ligo creating build/temp.macosx-10.15-x86_64-cpython-38/ligo/lw clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -Iligo/lw -I/usr/local/opt/python@3.8/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c ligo/lw/tokenizer.RowBuilder.c -o build/temp.macosx-10.15-x86_64-cpython-38/ligo/lw/tokenizer.RowBuilder.o xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun error: command '/usr/bin/clang' failed with exit code 1 [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for python-ligo-lw Running setup.py clean for python-ligo-lw Building wheel for lscsoft-glue (pyproject.toml) ... error error: subprocess-exited-with-error

× Building wheel for lscsoft-glue (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [55 lines of output] running bdist_wheel running build running build_py generating glue/git_version.py /private/var/folders/s9/t49rydtj00dfkh3ps3s2lgg40000gn/T/pip-build-env-2p3j3xhe/overlay/lib/python3.8/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. warnings.warn(msg, warning_class) not in git checkout or cannot find git executable; using existing glue/git_version.py creating build creating build/lib.macosx-10.15-x86_64-cpython-38 creating build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/text_progress_bar.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/pidfile.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/LDBDWClient.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/iterutils.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/gpstime.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/markup.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/utils.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/pipeline.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/lal.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/git_version.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue copying glue/ldbd.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue creating build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/ligolw.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/ilwd.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/lsctables.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/param.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/types.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/dbtables.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/table.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw copying glue/ligolw/array.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw creating build/lib.macosx-10.15-x86_64-cpython-38/glue/segmentdb copying glue/segmentdb/query_engine.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/segmentdb copying glue/segmentdb/segmentdb_utils.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/segmentdb copying glue/segmentdb/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/segmentdb creating build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/coalesce_db.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/ligolw_add.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/search_summary.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/segments.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/init.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/ligolw_sqlite.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/coincs.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/print_tables.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/process.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils copying glue/ligolw/utils/time_slide.py -> build/lib.macosx-10.15-x86_64-cpython-38/glue/ligolw/utils running build_ext building 'glue.ligolw.tokenizer' extension creating build/temp.macosx-10.15-x86_64-cpython-38 creating build/temp.macosx-10.15-x86_64-cpython-38/glue creating build/temp.macosx-10.15-x86_64-cpython-38/glue/ligolw clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -Isrc -Iglue/ligolw -I/usr/local/opt/python@3.8/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c glue/ligolw/tokenizer.RowBuilder.c -o build/temp.macosx-10.15-x86_64-cpython-38/glue/ligolw/tokenizer.RowBuilder.o xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun error: command '/usr/bin/clang' failed with exit code 1 [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for lscsoft-glue Failed to build ligo-segments python-ligo-lw lscsoft-glue ERROR: Could not build wheels for lscsoft-glue, which is required to install pyproject.toml-based projects

lpsinger commented 1 year ago

Please make sure that you have the latest version of Xcode installed, and that you have installed Xcode's command line tools.