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lrsoenksen / HAIM

This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng C et al. 2022).
Apache License 2.0
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Can't locate file #9

Closed ArbelHaiman closed 1 year ago

ArbelHaiman commented 1 year ago

In your code, you refer to a file named: "mimic-cxr-2.0.0-jpeg-txt.csv", which seems to be a part of the files of the MIMIC-CXR-JPG dataset. However, I can't find this file anywhere in the data of Physionet... Can you please refer to the location I can find this file? Thank you

lrsoenksen commented 1 year ago

Hi @ArbelHaiman, indeed, those are the notes and text compiled from the images in CXR corresponding to MIMIC-IV. We wanted to add these here, but the policy from PhysioNet.org is that we cannot directly share this compiled data via github. Physionet is the only ones with permision to do si, I believe Physionet has either released these notes (through another file name) or is planning to do so as part of their full release of MIMIC-IV.

ArbelHaiman commented 1 year ago

I understand. Thank you