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ls-cwi / heinz

Single species module discovery
MIT License
13 stars 8 forks source link

Functionality of 'print' missing #10

Closed Xentrics closed 6 years ago

Xentrics commented 6 years ago

Hello there! In your release version, you produced a binary called 'print' during compilation that could create the weights for the network from a list of genes with their adjusted P-values. Unfortunately, that release does not seem to compile with the current CPLEX 12.8 release. Your current Version on git-hub does compile though.

I would like to know if the functionality of 'print' is still available somehow? I cannot seem to start it without existing weights.

guwek commented 6 years ago

On my machine the current version on https://github.com/ls-cwi/heinz does compile with CPLEX 12.8 and ‘make print’ works as well.

Is that what you were doing? Exactly what does not work?

Thanks Gunnar

On 23. Apr 2018, at 10:42, Xentrics notifications@github.com wrote:

Hello there! In your release version, you produced a binary called 'print' during compilation that could create the weights for the network from a list of genes with their adjusted P-values. Unfortunately, that release does not seem to compile with the current CPLEX 12.8 release. Your current Version on git-hub does compile though.

I would like to know if the functionality of 'print' is still available somehow? I cannot seem to start it without existing weights.

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Xentrics commented 6 years ago

Okay, that works fine :). I wasn't aware that I may have to call "make" two times.

For reference sake: I asked because the tool "metaModules" makes use of your tool here and failed to do so (because the binary was missing and I didn't know what exactly it does). But after small modifications, it seems to work now.

Thank you!