lsj2408 / Transformer-M

[ICLR 2023] One Transformer Can Understand Both 2D & 3D Molecular Data (official implementation)
https://arxiv.org/abs/2210.01765
MIT License
201 stars 24 forks source link

OSError: /home/miniconda3/envs/Transformer-M/lib/python3.7/site-packages/torch_sparse/_convert_cuda.so: undefined symbol: _ZNSt15__exception_ptr13exception_ptr9_M_addrefEv #20

Open Saoge123 opened 6 months ago

Saoge123 commented 6 months ago

Hi: Thanks for sharing the code of your cool work. The code is OK when I run the train.py in terminal of ubuntu 22.04. However, when I debug the code by VScode, an error occurred: OSError: /home/xx/miniconda3/envs/Transformer-M/lib/python3.7/site-packages/torch_sparse/_convert_cuda.so: undefined symbol: _ZNSt15__exception_ptr13exception_ptr9_M_addrefEv.

/home/xx/miniconda3/envs/Transformer-M/lib/python3.7/site-packages/torch_sparse/_convert_cuda.so: undefined symbol: _ZNSt15exception_ptr13exception_ptr9_M_addrefEv File "/home/xx/Transformer-M-main/Transformer-M/data/dataset.py", line 3, in from ogb.lsc import PCQM4Mv2Evaluator File "/home/xx/Transformer-M-main/Transformer-M/tasks/graph_prediction.py", line 37, in from ..data.dataset import ( File "/home/xx/Transformer-M-main/fairseq/tasks/init.py", line 119, in import_tasks importlib.import_module(namespace + "." + task_name) File "/home/xx/Transformer-M-main/fairseq/utils.py", line 511, in import_user_module import_tasks(tasks_path, f"{module_name}.tasks") File "/home/xx/Transformer-M-main/fairseq/options.py", line 237, in get_parser utils.import_user_module(usr_args) File "/home/xx/Transformer-M-main/fairseq/options.py", line 38, in get_training_parser parser = get_parser("Trainer", default_task) File "/home/xx/Transformer-M-main/fairseq_cli/train.py", line 493, in cli_main parser = options.get_training_parser() File "/home/xx/Transformer-M-main/train.py", line 14, in cli_main() OSError: /home/xx/miniconda3/envs/Transformer-M/lib/python3.7/site-packages/torch_sparse/_convert_cuda.so: undefined symbol: _ZNSt15exception_ptr13exception_ptr9_M_addrefEv