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lskatz / Bio--Kmer

A perl module for kmer counting
MIT License
1 stars 3 forks source link

murmur3 #9

Open lskatz opened 1 week ago

lskatz commented 1 week ago

I wonder if adding in a hashing algo would make this faster?

# pseudocode
sub count{
  my($read) = @_;
  for $kmer {
    my $hash murmur3($kmer);
    addKmer($hash);
  }
}
lskatz commented 1 week ago

https://metacpan.org/release/DMAKI/Digest-MurmurHash3-0.03/view/lib/Digest/MurmurHash3.pm

lskatz commented 1 week ago

or even something in core perl and that's fast like sha1