lskatz / SneakerNet

:feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run
Apache License 2.0
11 stars 4 forks source link

Switch to Fasten from CG-Pipeline in a future version of SneakerNet #37

Open lskatz opened 4 years ago

lskatz commented 4 years ago

Is your feature request related to a problem? Please describe. No

Describe the solution you'd like In a future version of SneakerNet, I would like to move from CG-Pipeline to Fasten for things like read metrics. CG-Pipeline is slower and has a wonky installation.

Describe alternatives you've considered None

Additional context Will mostly affect the readMetrics plugin but might need to update SneakerNet.pm. Will need to change dependencies to list Fasten and not CG-Pipeline.

URL: https://github.com/lskatz/fasten