Closed telatin closed 9 months ago
for fasten_mutate is not clear if the number of SNPs should be guaranteed or it's just a maximum.
fasten_mutate
From the tests it looks like the second:
for i in {1..30}; do ./target/debug/fasten_mutate < testdata/four_reads.fastq --snps 5 -m | awk 'NR % 4 == 2' | \ sed 's/[a-z]//g' | perl -ne 'chomp; if (length($_)!=5){die "Error: unexpected SNPs count: $_\n"}'; done
If this is the intended behaviour I would specify so in the help page
-s, --snps INT Number of SNPs (point mutations) to include per read.
linked to #20
for
fasten_mutate
is not clear if the number of SNPs should be guaranteed or it's just a maximum.From the tests it looks like the second:
If this is the intended behaviour I would specify so in the help page
linked to #20